Changes in version 5.0.0 (2026-03-28) Major Changes Complete rewrite of read_npx() (@klevdiamanti) - read_npx() (and its alias read_NPX()) has been fully rewritten with improved architecture, splitting the monolithic reader into dedicated sub-readers for each file format: Excel, delimited (CSV/TSV), Parquet, ZIP archives, and wide-format qPCR exports - New parameters have been added for greater control over data import: out_df (output format), long_format, olink_platform, data_type, .ignore_files, quiet, and legacy. - Automatic detection of file format, Olink platform, and data type. New check_npx() function (@klevdiamanti, @MasoumehSheikhi & @KangD-dev) - A new exported function check_npx() validates NPX data for correctness and completeness before downstream analysis. - Checks include: column name standardization, OlinkID validity, assays with all-NA values, duplicate sample identifiers, column data types, assay QC warnings, UniProt mapping consistency, and DarID validity. - Returns a structured list with detailed diagnostics that can be used as input to clean_npx(). - The list check log output from check_npx() is now used in all the functions in downstream analysis to allow for alternative column names and provide consistent and informative warnings and errors when data issues are detected. New clean_npx() function (@klevdiamanti & @KangD-dev) - A new exported function clean_npx() applies an automated quality-control cleaning pipeline to remove unsuitable data records. - Cleaning steps include: removing assays with invalid OlinkIDs, removing assays with all-NA quantification values, removing duplicate samples, removing external control samples, removing QC-failing samples, removing internal control assays, removing assays with QC warnings, correcting column data types, and resolving non-unique UniProt mappings. - Each cleaning step can be individually toggled on or off. Vignettes moved to OlinkAnalyzeVignettes (@klevdiamanti & @dtopouza) - All vignettes except from the main guide-Vignette (LOD, outlier exclusion, bridging introduction, cross-product bridging, and plate randomizer) have been moved to the sibling package OlinkAnalyzeVignettes that will be online soon, to reduce package size and installation time. Function naming standardization (@klevdiamanti, @kathy-nevola, @KangD-dev, @dtopouza, @kristynchin-olink, @amrita-kar & @kristianHoden) - Some functions, such as read_NPX(), have been renamed to their equivalent snake case read_npx() to be more intuitive and consistent with R naming conventions. Previous function names are retained as aliases for backward compatibility. Minor Changes (@klevdiamanti, @kathy-nevola, @KangD-dev, @dtopouza, @kristynchin-olink, @amrita-kar & @kristianHoden) - arrow, duckdb, and dbplyr are now imported for enhanced Parquet file support and efficient data processing. - cli is now used for most user-facing messages, warnings, and error reporting - The magrittr pipe (%>%) has been replaced by the native R pipe (|>). throughout the package; magrittr is no longer a dependency. - A new olink_osi_dist_plot() function has been added for visualizing Olink Sample Index (OSI) values distributions. - The functions olink_qc_plot(), olink_pca_plot() and olink_umap_plot() now have full support for OSI values. - Internal input validation has been improved with a suite of type-checking helper functions. - Test infrastructure has been expanded with parallel test execution enabled via testthat edition 3, and test coverage extended to >90%. - Several dependencies have been moved from Imports to Suggests (broom, car, emmeans, ggpubr, ggrepel, readxl, rstatix, FSA) to reduce the package's installation footprint Changes in version 4.5.0 (2026-01-28) Minor Changes - Added section to LOD vignette about how to handle LOD in bridged data (#656, @KangD-dev) - Support for NPX files from NPX Map 2.0 was added to read_NPX (#660, @kathy-nevola) - Continuous color scale was added to PCA for graphing Olink Sample Index (OSI) continuous columns (#659, @amrita-kar) - Function for formatting bridged data was updated to work with other types of normalization (#643, @dtopouza, #644, @klevdiamanti) Bug Fixes - olink_ordinalRegression changed from type = 3 to type = "marginal" to work with newest version of ordinal package (#657, @kathy-nevola) - Regex fixed for DarID detection in olink_lod and read_NPX (#658, @kathy-nevola) Changes in version 4.4.0 (2025-12-02) Minor Changes - Added support for bridging Olink Explore HT and Olink Reveal (#645, #636, #639, @boxizhang, @amrita-kar, @kathy-nevola, @dtopouza, @klev-diamanti) - Add warning message for specific DarID-SW export combinations that require re-export (#635, @kathy-nevola) - Added instructions for how to add LOD data to cross product bridging (#642, @KangD-dev) Bug Fixes - Fix wording of bridgeable assays in cross-product bridging tutorial (#632, #630, @kathy-nevola) - Fixed warning message in case of duplicate samples so that samples with control assays did not count as duplicated samples (#634, @amrita-kar) - QS Normalization will now exclude bridge samples with NA with warning, preventing error (#640, @klev-diamanti) Changes in version 4.3.2 (2025-09-24) Bug Fixes - Tests for olink_wilcox() are now arranged by Assay name to handle ties (#616, @boxizhang) - The extrafont package has been removed as a dependency as it is archived on CRAN (#619, @klevdiamanti) - Regex in olink_lmer() has been improved to better capture the warning message (#618, @klevdiamanti) - Handling for when AssayQC is not present in both data sets for normalization (#620, @klevdiamanti) Changes in version 4.3.1 (2025-07-31) Bug Fixes - olink_lod() call to checkNPX() now correctly uses data instead of df, allowing the function to run without error (#579, @klevdiamanti) - broken link in bridging tutorial has been fixed (#597, @amrita-kar) - minor edits have been made to the bridging tutorial and olink_bridgeselector() to clarify how to set sampleMissingFreq argument for different products and biological contexts (#597, @amrita-kar, #596, @kathy-nevola) - minor edits have been made to the bridging tutorial to clarify that Ct and count data is not normalized during bridging and to define a batch (#597, @amrita-kar) Changes in version 4.3.0 (2025-06-24) Minor Changes - Recommended Olink Reveal bridge sample numbers have been added to the bridging tutorial (#523, @kathy-nevola) - Missing meta-data in parquet files now result in a warning instead of an error (#540, @OlaCaster) - Pathway enrichment updated to support msigdbr v10.0 (#542, @klevdiamanti) - Support for PanelVersion and LODNPX was added (#551, #552, #559, @klevdiamanti, @MasoumehSheikhi) - Support for new version of warning message when converting LME results to tidy format has been added (#565, @kathy-nevola) - Improvements made to user interface for olink_bridgeability_plot() (#525, #522, @klevdiamanti) Bug Fixes - Fixed bug causing missing significance stars in olink_boxplot (#536, @boxizhang) - Files with multiple quantification files will now select the quantification method to use (#563, @kristynchin-olink, @amrita-kar) - OlinkIDs with multiple UniProt IDs across different panel versions will now be harmonized to one UniProt ID to allow for assays to be analyzed together (#564, @kathy-nevola) Changes in version 4.2.0 (2025-02-24) Minor Changes - Cross-product bridging is now supported for bridging Olink Explore 3072 to Olink Reveal (#509, @kathy-nevola) - Standard data exports from NPX Signature 2.0 are now supported (#511, @KangD-dev) - Kang Dong and Stephen Pollo have been added as authors (#514, @kathy-nevola) - MaxLOD will be recalculated after bridging to reflect the MaxLOD across all projects (#505, @klevdiamanti) Bug Fixes - A warning message will be displayed when fewer than the recommended number of bridging samples are used in cross product bridging (#507, @klevdiamanti) - If count data is not provided in cross-product bridging, an error message will occur (#510, @kristynchin-olink) - For cross-product bridging, if the sample type and assay warning columns do not have the same column naming (ex: SampleType and Sample_Type), both columns will be included in the output. (#515, @spollo-olprot, @MasoumehSheikh) Changes in version 4.1.1 Minor Changes - Images were decreased in dimension to meet CRAN Size requirements (#500, @kathy-nevola) Bug Fixes - Dataframe name was corrected in Olink Explore 3072 to Olink Explore HT bridging tutorial Downstream Analysis section. (#500, @kathy-nevola) Changes in version 4.1.0 Minor Changes - Functionality has been added to read_NPX, olink_lod, and olink_plate_randomizer to support additional data types (#487, @kathy-nevola) - A new function has been added to visualize the criteria used to establish the recommended bridging method for an assay in cross-product bridging (#468, @amrita-kar) - A new function has been added to simplify data wrangling on bridged data after cross-product bridging (#472, @dtopouza) - The tutorial on Olink Explore 3072 to Explore HT bridging has been updated to reflect the new functions (#473, @kristynchin-olink) - Documentation for plate randomization when keeping samples from the same studies together has been improved in function documentation and the Plate Randomization tutorial (#483, @kathy-nevola) - Contact us and legal disclaimer information has been updated and added to all tutorials (#490, @kathy-nevola) - A Research Use Only (RUO) message is now printed when reading parquet files (#487, @kathy-nevola) - References to NPX Explore have been generalized to Olink Software in tutorials (#490, @kathy-nevola) - The overview tutorial has been updated and streamlined (#473, @kristynchin-olink) Bug Fixes - Assay CTRL is no longer characterized as a control assay (#484, @dtopouza) - An error that had previously limited Explore HT to Explore HT bridging has been resolved (#491, @klevdiamanti) - The minimum number of bridge samples for QS normalization has been corrected to 40 samples. - The Block column is now transformed into a character value to ensure consistency across products. - An error that had previously impacted paired Wilcoxon tests has been resolved. (#485, @boxizhang) Changes in version 4.0.2 (2024-11-22) Bug Fixes - Product is now identified by column name for cross-product normalization, rather than OlinkIDs. This allows for non-overlapping assays to be present in input files. (#469, @kathy-nevola) - Added many-to-many mapping in joining Explore HT data to the mapping file to support correlation assays (#469, @kathy-nevola) - Corrected spelling in error message. (#469, @kathy-nevola) - Fixed typo in NotBridgeable category name in tutorial (#471, @dtopouza) Changes in version 4.0.1 (2024-09-24) Minor Changes - larger rds files used for unit tests have been excluded from build to abide by CRAN size limitations (#462, @kathy-nevola) Changes in version 4.0.0 Major Changes - olink_normalization can now be used for bridging Explore 3072 data to Explore HT data (#453, #452, #439, #449, #447,#446, #441, #440, #434, #422, #436, #435 @klevdiamanti, @kathy-nevola, @kristynchin-olink, @dtopouza, @amrita-kar, @MasoumehSheikh) - olink_normalization has undergone major changes to improve speed, reproducibility, and extending functionality (#418, @klevdiamanti, @kristynchin-olink, @MasoumehSheikh) Minor Changes - New tutorial has been added to explain and support Explore 3072 to Explore HT bridging (#448, #428, #427, #426, #425, #424, #423, @kristynchin-olink, @boxizhang, @dtopouza, @kathy-nevola, @MasoumehSheikh) - Update FAQ links in tutorials with queries links (#451, @kathy-nevola) - Decrease package size on Mac and Linux (#445, @kathy-nevola) - Removed redundant information from overview vignette (#458, @kathy-nevola) Bug Fixes - Add support back for files with quotes to read_NPX (#431 @kathy-nevola) Changes in version 3.9.1 Bug Fix - Extra set of parentheses removed from vignette (#430, @kathy-nevola) Changes in version 3.9.0 Minor Changes - Explore HT recommended bridging samples have been added to Introduction to Bridging tutorial (#409, @kathy-nevola) - Support for CSVs with SampleQC column was added to read_NPX (#406, @kathy-nevola) - Support for Olink Analyze Export parquets was added to read_NPX (#408, @kathy-nevola) - Quantitative value csvs will now give a warning about limited support for Quant data (#406, @kathy-nevola) - Instructions for importing multiple NPX files has been added to the overview tutorial (#403, @dtopouza) - Additional background information was added to the LOD tutorial to clarify how LOD is calculated from counts (#404, @kathy-nevola) - LOD can now be calculated using fixed LOD, negative controls, or both methods (#390, @kathy-nevola) - An error message will now appear when running anova and control assays are present (#416, @dtopouza) - Danai Topouza's role has been changed from contributor to author (#415, @kathy-nevola) Bug Fixes - URLs in tutorials will now direct to updated olink.com locations (#402, @kathy-nevola) - Instructions to export parquet files with LOD have been updated (#408, @kathy-nevola) - removed scale_name argument when ggplot2 3.5+ is installed (#421, @kathy-nevola) Changes in version 3.8.2 (2024-06-27) Bug Fixes - update to URL hyperlink in LOD tutorial to include https - data with Plate_LQL and PlateLQL columns in long format will now be supported (#392, @klevdiamanti) Changes in version 3.8.1 Bug Fixes - update to outdated URL in LOD tutorial Minor Changes - Function support for calculating LOD for Explore data (#355, @kathy-nevola, @klevdiamanti, @leiliuC) - Tutorial and documentation for calculating LOD for Explore data (#364, @MasoumehSheikh, @kristynchin-olink, #388, @kathy-nevola, @amrita-kar) - Addition of Danai Topouza as contributor and Kristyn Chin as author (previously contributor) (#365, @kathy-nevola) Bug Fixes - Removed outdated reference to NPX Manager (#354, @dtopouza) - Removed mention of Welch's t-test in Mann Whitney documentation (#354, @dtopouza) - Assays that include apostrophes will now be read in correctly from long format csvs (#381, @kathy-nevola) Changes in version 3.7.0 (2024-02-22) Minor Changes - Support for Explore 3072 data in parquet form added (#327, @kathy-nevola, @klevdiamanti) - Support for pathway enrichment when LOD is not present added (#329, @kathy-nevola) - Clarification to remove controls when selecting bridging samples added in bridging tutorial (#330, @kathy-nevola) - Addition of Kristyn Chin as contributor (#331, @kathy-nevola) - Addition of URLs and Contact information in Description (#331, @kathy-nevola) Changes in version 3.6.2 (2024-01-13) Bug Fixes - Packages in Suggest field are now called conditionally in vignettes, tests, and examples. (#319, @kathy-nevola) - read_NPX will now work with Target 96 data that does not contain "Target 96" in the panel name (#320, @kathy-nevola) - olink_lmer will no longer require the presence of an Index column in the data (#321, @kathy-nevola) - corrected examples for subset normalization (#312 @kathy-nevola) - added additional information on example data to outlier vignette (#313 @kathy-nevola) - clarified documentation for longitudinal randomization (#314 @kathy-nevola) - corrected warning message for olink_ordinalRegression (#296 @boxizhang) Changes in version 3.6.1 Minor Changes - Install package Matrix from source in CI. (#299 @klevdiamanti, @AskPascal) Changes in version 3.6.0 (2023-11-03) Minor Changes - Plate LOD will be chosen over Max LOD when both are present (#288, @kathy-nevola) - Data from NPX Signature 1.8+ is now supported by read_NPX when in long format csv (#293, @Orbmac, @kathy-nevola) - olink_pca_plot will now be faster (#289, @MasoumehSheikh) Bug Fixes - olink_normalization and related function will now compare normalization strategy by assay (#291, klevdiamanti) - Excluded assays will not cause warnings in olink_normalization (#291, klevdiamanti) - olink_pca_plot will now show the same label and text for point when SampleID is numeric (#289, @MasoumehSheikh) Changes in version 3.5.1 (2023-08-08) Bug Fixes - read_NPX will now support additional formats of parquet files Changes in version 3.5.0 Minor Changes - read_NPX will now detect and import Flex excel files in wide format (@kathy-nevola, #234) - Add example of bridge samples selector and minor updates for clarity to Intro to bridging vignette (@Orbmac, @kathy-nevola, #260) - Increase plate randomizer unit test coverage (@amrita-kar, #264) - Add support for parquet files in read_NPX (@kathy-nevola, #265, @klevdiamanti, #270) - Add support for alternative forms of LOD including Max and Plate LOD (@kathy-nevola, #267) - Add support for SampleQC column (alternative to QC_Warning) (@kathy-nevola, #267, @MasoumehSheikhi, @268) - Add support for plate randomization with variable control numbers (@kathy-nevola, @AskPascal, #269) - Controls can now be randomized across the plate with olink_plate_randomizer (@kathy-nevola, @AskPascal, #269) - Minor updates for clarity to Plate Randomization vignette (@kathy-nevola, @AskPascal, #269) - Change formatting for long format Target CSVs to match excel (@kathy-nevola, #273) Bug Fixes - Project name is now consistent and generic throughout bridging vignette (@kathy-nevola, #257) - Estimate is now included in output when Paired Mann-Whitney U test is performed (@boxizhang, #259) Changes in version 3.4.1 (2023-05-08) Bug Fixes - Skip PCA snapshot tests in R version > 4.2.3 (@AskPascal, #254) - Bridge selector will now return all samples when requesting max number of samples based on missing frequency (@klevdiamanti, #252) - Fixed unit tests to expect NA as logical instead of "NA" as character (@MasoumehSheikhi, #250) Changes in version 3.4.0 (2023-04-26) Minor Changes - User can now specify label for proteins in olink_heatmap_plot() (@simfor, #228) - Updates to unit test and CI based on dependency changes (@AskPascal, #231, #236, #240) - Addition of normalization functions to simplify bridge, subset, and multi-batch normalization (@klevdiamanti, #201) - Introduction to bridging vignette added (@leiliuC, @kathy-nevola, #174) - Plate Randomization vignette added (@boxizhang, #241) - Outlier Exclusion vignette added (@kathy-nevola, #229) - Added Lei Conze as author (@kathy-nevola, #246) - Addition of citation (@kathy-nevola, #246) Bug Fixes - Update to olink_wilcox documentation and UniProt description in documentation has been corrected (@boxizhang, #235) Changes in version 3.3.1 (2023-02-27) Bug Fixes - olink_pathway_enrichment now prints a message when there are non matching names when using method = "ORA" (@MasoumehSheikhi, #222) - olink_pca_plot will now generate PCA when data is missing from the first OlinkID (@kathy-nevola, #221) - read_NPX now supports csv files with Sample_Type column but not ExploreVersion column (@klevdiamanti, #220) - extra columns in input file will no longer result in a warning message (@kathy-nevola, #223) Changes in version 3.3.0 (2023-01-24) Minor Changes - Support for additional versions of Olink data - Read_NPX now supports a wider range of Olink data types (@AskPascal, @kathy-nevola, #207, #208, #211, #216) - Automatic support for normalizing 2 datasets with different column configurations - olink_normalization will now automatically add missing columns to datasets (filled NA) to allow data with different configurations to be more easily normalized together (@kathy-nevola, #212) - Automatic checking that datasets used the same normalization method before bridging - Datasets that were normalized with different methods (different values in normalization column) will now warn before performing normalization (@klevdiamanti, #210) Bug Fixes - Data with '#' in SampleID column is now supported (@AskPascal, #208) - PCA can now be generated when indices are not consistent across SampleIDs (@amrita-kar, #206) Changes in version 3.2.2 (2022-11-15) Bug Fixes - remove www. from links in vignette to prevent rerouting of URL (@kathy-nevola, #188) - update set_plot_theme() to use linewidth instead of size per ggplot2 3.4 Changes in version 3.2.1 Bug Fixes - Change in unit test to write to temporary directory (@AskPascal, #181) Changes in version 3.2.0 (2022-11-01) Minor Changes - Addition of functions to perform Uniform Manifold Approximation and Projection (UMAP) dimensional reduction and plots (@simfor, #139) - Add additional install methods to Readme (@AskPascal, #153) - ggrepel can now be disabled when outlier lines are present in the PCA plot (@klevdiamanti, #158) - Long running unit tests are now skipped on CRAN (@AskPascal, #163) - Internal functions were added to read_NPX to support future development (@klevdiamanti, #167) - CI workflows were refactored to utilize external actions (@AskPascal, #169) - Read_NPX will now warn the user when NAs are detected in the NPX column (@AskPascal, #170) - Friedman test interface and documentation was updated to be more intuitive (@boxizhang, #171) Bug fixes - Pathway enrichment p-values are now in the correct order when plotting (@klevdiamanti, #164) - PCAs now behave the same with any locale (@AskPascal, #173) - Read_NPX now accepts either Panel_Version or Panel_Lot_Nr in input files (@klevdiamanti, #156) - Assays that only have NPX = NA will now be excluded from all analyses and figures (@simfor, @kathy-nevola, @AskPascal, #176) - Refactor code to use tidyselect::all_of() in recommended way (@AskPascal, #177) - vdiffr based unit tests were reactivated (@AskPascal, #172) Changes in version 3.1.0 (2022-06-10) Minor Changes - Non-parametric functions are now available (@boxizhang, #114, #142) - Updated installation instructions to reflect CRAN acceptance (@kathy-nevola, #107) - Zipped files from MyData can now be used as input for read_NPX (@klevdiamanti, #115) - LME and ANOVA formulas can now be customized (@jrguess, #120) - Pathway enrichment functions and visualizations are now available (@kathy-nevola, #125) - Heatmaps can now be generated (@Orbmac, $127) - olink_boxplot function now has significance bars and stars (@boxizhang, #132) - PCA preprocessing was moved to internal function (@simfor, #133) - olink_plate_randomizer will now return a warning if there are duplicate SampleIDs or if SubjectColumn is missing (@kristianHoden, #146) - olink_plate_randomizer can now keep studies together on plates (@kristianHoden, #146) - Added Masoumeh Sheikhi and Boxi Zhang as authors - Added Kristian Hodén as contributor Bug Fixes - olink_pca_plot by Panel will now show correct colors when a variable is missing (@MasoumehSheikhi, Issue #117, Commit 0f2f157) - olink_ttest will now return a warning message if an assay has less than 2 datapoints in a group. (@marisand, #110) - LMER class is now checked using inherits (@MasoumehSheikhi, #134) - License was corrected to AGPL-3 (@Orbmac, #138) - Correct output type of olink_dist_plot in vignette to ggplot object (@kathy-nevola, Issue #112, #141) - Previously called "intensity normalization" has been clarified as a special type of subset normalization and an example has been added to the documentation and vignette (@Orbmac, #144) Changes in version 3.0.0 (2022-02-10) Major Changes - displayPlateDistributions and displayPlateLayout names were updated to olink_displayPlateDistributions and olink_displayPlateLayout (@simfor, #98) Minor Changes - Update CI to Ubuntu 20.04 (@AskPascal, #97) - olink_bridgeselector will now give an error if less than n (number of) bridge samples can be selected based on set sampleMissingFreq (@marisand, #100) - update return value documentation for all functions to specify columns and class of output (@kathy-nevola, #102) - replaced or removed cat/print with message/stop so messages printed to the console can be suppressed (@jrguess, #103) Bugfixes - fixed spelling mistakes in documentation (@kathy-nevola, #92) - updated DESCRIPTION to fit CRAN specification (@kathy-nevola, #94) - change T/F to TRUE/FALSE for stability (@AskPascal, #96) - updated documentation to olink_plate_randomizer, olink_displayPlateDistributions and olink_displayPlateLayout to link related functions and clarify olink_plate_randomizer documentation (@simfor, #98) - fixed keywords in documentation (@kathy-nevola, #99) Changes in version 2.0.1 Bug Fixes - Remove hexagon from Readme (@kathy-nevola, #86) - Replace OlinkAnalyze with Olink® Analyze (@kathy-nevola, #86) - Add Ola Caster to author list - Update documentation to change olinkR to Olink Analyze (@jrguess, #89) Changes in version 2.0.0 Major Changes - Package is in the process of being submitted to CRAN - Added ability to prevent OlinkAnalyze from loading fonts and setting to themes (@OlaCaster, #73) - Decreased the size of npx_data1 and npx_data2 to 2 panels instead of 12 (@kathy-nevola, #76) - Updates to the olink_qc_plot and olink_pca_plot functions (@simfor, #78) BugFixes - Moved NEWS.md to correct level (@kathy-nevola, #74) - Added cran-comments.md file to document Notes for CRAN submission (@kathy-nevola, #74) - Update Vignette to reflect new functionality (@kathy-nevola, #78) Changes in version 1.3.0 Major Changes - DESCRIPTION file updated to include all authors and maintainers (@kathy-nevola, #66) - Unit testing was added (@marisand, @simfor, #65, #55, #47) - Continuous Integration (CI) was added (@AskPascal, #57, #53, #40, #31) - read_NPX now converts Panel Names to Sentence case except Roman Numerals (@kathy-nevola, #44) - Output order of olink_bridgeselector() is now randomized (@marisand, #60) - PlateSize argument was added to displayPlateLayout() and olink_plate_randomizer for T48 and T96. Hardcoded sizes have been removed. (@marisand, #47) - Changed olink_pal() to have gray instead of light blue (@marisand, #22) Bug Fixes - set_plot_theme() will now load Swedish Gothic Thin if available on all OS (@marisand, @AskPascal, #70, #39) - Help documentation was updated to correct typos and clarify notation for ANOVA and LME models (@kathy-nevola, @marisand,@AskPascal #67, #33, #37) - Fix olink_dist_plot() from showing multiple bars when sample has QC warning in some assays (@marisand, @AskPascal, #64) - Fix olink_qc_plot() from showing multiple points/labels when sample has QC warning in some assays (@marisand, @AskPascal, #63) - Panel names in npx_data1 and npx_data2 were fixed to match new read_NPX() formatting (@kathy-nevola, #62) - olink_bridgeselector() QC warning filtering changed to match olink_qc_plot() and olink_dist_plot() (@marisand, @AskPascal, #61) - global variables are now specified (@kathy-nevola, #45) - Function documentation updated to remove notes on R CMD check (@kathy-nevola, #39) - Fix summary casting "tukey" to "sidak" adjustment warning in olink_anova_posthoc() and olink_lmer_posthoc() functions (@marisand, #38) - Update functions to import selectively (@kathy-nevola, @Orbmac, @AskPascal, @marisand, #21, #20, #19, #18, #15, #29) - Fix guides size argument in olink_pca_plot() (#17) (@AskPascal, #24)